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• Using Artificial Epigenetic Regulatory Networks to Control Complex Tasks within Chaotic Systems / Alexander P. Turner, Michael A. Lones, Luis A. Fuente, Susan Stepney and Leo S. Caves, et al.
• A Gene Regulatory Network Simulation of Heterosis / Peter Martin Ferdinand Emmrich, Hannah Elizabeth Roberts and Vera Pancaldi
• Comparing Discrete and Piecewise Affine Differential Equation Models of Gene Regulatory Networks / Shahrad Jamshidi, Heike Siebert and Alexander Bockmayr
• Automatic Inference of Regulatory and Dynamical Properties from Incomplete Gene Interaction and Expression Data / Fabien Corblin, Eric Fanchon, Laurent Trilling, Claudine Chaouiya and Denis Thieffry
• CRISPR Transcript Processing: An Unusual Mechanism for Rapid Production of Desired Molecules / Marko Djordjevic, Konstantin Severinov and Magdalena Djordjevic
• A Comprehensive Computational Model to Simulate Transcription Factor Binding in Prokaryotes / Nicolae Radu Zabet and Boris Adryan
• Evolved Artificial Signalling Networks for the Control of a Conservative Complex Dynamical System / Luis A. Fuente, Michael A. Lones, Alexander P. Turner, Susan Stepney and Leo S. Caves, et al.
• The Effect of Membrane Receptor Clustering on Spatio-temporal Cell Signalling Dynamics / Bertrand R. Caré and Hédi A. Soula
• Systems Biology Analysis of Kinase Inhibitor Protein Target Profiles in Leukemia Treatments / Jacques Colinge, Uwe Rix, Keiryn L. Bennett and Giulio Superti-Furga
• Multispecific Interactions in Enzymatic Signalling Cascades / Daniel D. Seaton and J. Krishnan
• Role of Physico-chemical Properties of Amino Acids in Protein's Structural Organization: A Network Perspective / Dhriti Sengupta and Sudip Kundu
• Tailored Strategies for the Analysis of Metabolomic Data / Kristen Feher, Kathrin Jürchott and Joachim Selbig.

• Evolving Locomotion for a Simulated 12-DOF Quadruped Robot / Gordon Klaus, Kyrre Glette and Mats Høvin
• Predictive Modelling of Stem Cell Differentiation and Apoptosis in C. elegans / Antje Beyer, Ralf Eberhard, Nir Piterman, Michael O. Hengartner and Alex Hajnal, et al.
• Criticality of Spatiotemporal Dynamics in Contact Mediated Pattern Formation / Nicholas S. Flann, Hamid Mohamadlou and Gregory J. Podgorski
• The Vasopressin System -- Asynchronous Burst Firing as a Signal Encoding Mechanism / Duncan J. MacGregor, Tom F. Clayton and Gareth Leng
• The Effective Calcium/Calmodulin Concentration Determines the Sensitivity of CaMKII to the Frequency of Calcium Oscillations / Thiago M. Pinto, Maria J. Schilstra and Volker Steuber
• The Effect of Different Types of Synaptic Plasticity on the Performance of Associative Memory Networks with Excitatory and Inhibitory Sub-populations / Alex Metaxas, Reinoud Maex, Volker Steuber, Rod Adams and Neil Davey
• Simulating Neurons in Reaction-Diffusion Chemistry / James Stovold and Simon O'Keefe
• Extending an Established Simulation: Exploration of the Possible Effects Using a Case Study in Experimental Autoimmune Encephalomyelitis / Richard B. Greaves, Mark Read, Jon Timmis, Paul S. Andrews and Vipin Kumar
• Human Uterine Excitation Patterns Leading to Labour: Synchronization or Propagation? / Eleftheria Pervolaraki and Arun V. Holden
• Evolving Computational Dynamical Systems to Recognise Abnormal Human Motor Function / Michael A. Lones, Stephen L. Smith, Andy M. Tyrrell, Jane E. Alty and D.R. Stuart Jamieson.

• Heat-Maps and Visualization for Heterogeneous Biomedical Data Based on Information Distance Geometry / Esther Loeliger, Chrystopher L. Nehaniv and Alastair J. Munro
• Bio-inspired Information Processing Applied to Engineering Systems / Cristina Costa Santini
• Understanding the Regulation of Predatory and Anti-prey Behaviours for an Artificial Organism / Maizura Mokhtar
• Closing the Gap between Life and Physics / Ron Cottam, Willy Ranson and Roger Vounckx
• Algebraic Analysis of the Computation in the Belousov-Zhabotinksy Reaction / Paolo Dini, Chrystopher L. Nehaniv, Attila Egri-Nagy and Maria J. Schilstra
• Improving Transcription Factor Binding Site Predictions by Using Randomised Negative Examples / Faisal Rezwan, Yi Sun, Neil Davey, Rod Adams and Alistair G. Rust, et al.
• Finding the Minimal Gene Regulatory Function in the Presence of Undefined Transitional States Using a Genetic Algorithm / Rocio Chavez-Alvarez, Arturo Chavoya and Cuauhtemoc Lopez-Martin
• Extracting Tailored Protein Complexes from Protein-Protein Interaction Networks / Hiroshi Okamoto
• A Parallel Algorithm for Multiple Biological Sequence Alignment / Irma R. Andalon-Garcia, Arturo Chavoya and M.E. Meda-Campaña.

This book constitutes the refereed proceedings of the 9th International Conference on Information in Cells and Tissues, IPCAT 2012, held in Cambridge, UK, in March/April 2012. The 13 revised full papers presented together with 26 extended abstracts were carefully reviewed and selected from numerous submissions. The papers cover a wide range of topics in disciplines related to genetic and epigenetic networks, transcriptomics and gene regulation, signalling pathways and responses, protein structure and metabolic networks, patterning and rhythm generation, neural modelling and neural networks, biomedical modelling and signal processing, information processing and representation, and algorithmic approaches in computational biology.

• Hippocampus and Neural Oscillations
• The Brain Computation Based on Synchronization of Nonlinear Oscillations: On Theta Rhythms in Rat Hippocampus and Human Scalp EEG
• Theta Phase Coding in Human Hippocampus: A Combined Approach of a Computational Model and Human Brain Activity Analyses
• Mechanisms for Memory-Guided Behavior Involving Persistent Firing and Theta Rhythm Oscillations in the Entorhinal Cortex
• Encoding and Replay of Dynamic Attractors with Multiple Frequencies: Analysis of a STDP Based Learning Rule
• A Biophysical Model of Cortical Up and Down States: Excitatory-Inhibitory Balance and H-Current
• Dynamics in Olfactory System and Behaviour
• Dynamical Architecture of the Mammalian Olfactory System
• From Behaviour to Brain Dynamics
• Correlation Structure of Spiking Trains
• Impact of Higher-Order Correlations on Coincidence Distributions of Massively Parallel Data
• Comparing Kurtosis Score to Traditional Statistical Metrics for Characterizing the Structure in Neural Ensemble Activity
• Neural Network Theories on Associative Memory
• Pioneeristic Works on Neuronal Nets: A Short History
• Place-Field and Memory Formation in the Hippocampus
• Improving Recall in an Associative Neural Network of Spiking Neurons.

This book is devoted to graduate students and researchers with different scientific background (including physics, mathematics, biology, neuroscience, etc.) who wish to learn brain science beyond the boundary of their fields. The volume presents 12 thoroughly revised tutorial papers based on lectures given by leading researchers at the 12th International Summer School on Neural Networks in Erice, Italy, in December 2008. The 12 invited and contributed papers presented provide primarily high-level tutorial coverage of the fields related to neuraldynamics, reporting recent experimental and theoretical results investigating the role of collective dynamics in hippocampal and parahippocampal regions and in the mammalian olfactory system. The book is divided into topical sections on hippocampus and neural oscillations, dynamics in olfactory system and behaviour, correlation structure of spiking trains, and neural network theories on associative memory.
(source: Nielsen Book Data)

• Intro; Preface; Organization; Contents; Biochemical Information Processing; Surface-Immobilised DNA Molecular Machines for Information Processing; 1 Information Processing with Bioelectronic Systems; 2 Experimental Studies of DNA Machines on Surfaces; 2.1 Materials and Methods; 2.2 Experimental Results; 3 Conclusion; References; Scalable Design of Logic Circuits Using an Active Molecular Spider System; 1 Introduction; 2 Model Description; 3 Logic Circuit Construction; 3.1 Normal Sites and Functional Sites; 3.2 Designs of the AND and OR Gates; 3.3 Design of the NOT Gate; 3.4 Gate Cascades

• 3.5 Complexity Analysis4 Formal Definition of the Model; 4.1 Site Types and Transition Rules; 4.2 Model Definition; 5 Conclusions and Discussions; References; Organic Mathematics: On the Extension of Logics from Physical Atoms to Cellular Information Processes; Abstract; 1 Introduction; 1.1 The Symbolic Gap; 1.2 The Logical Gap; 2 A Novel Electrical Notation for the Bio-chemical Sciences; 2.1 Origins of Atomic Numbers; 2.2 Extensions of the Atomic Numbers; 3 Perplex Notation and Physical Dependence of Organic Operands and Operations

• 3.1 Physically Independent and Interdependent Electrical Particles3.2 Constraints on Formal Electrical Logics; 4 Mereology and Electrically Labeled Bipartite Graphs; 4.1 Ratiocinations; 4.2 Mereology; 5 Conclusions; 5.1 The Role of Hybridizations of Logics in Organic Mathematics; 5.2 Future Work and International Collaboration; 6 Summary; References; Collective and Distributed Behaviour; An Ecosystem Algorithm for the Dynamic Redistribution of Bicycles in London; 1 Introduction; 2 Background; 3 Problem Description; 3.1 Problem Overview; 3.2 Performance Indicators; 3.3 Datasets; 4 Method

• 4.1 Assumptions and Restrictions4.2 Bicycle Distribution Simulator; 4.3 Truck Scheduling Algorithms; 5 Experiments; 6 Results and Analysis; 7 Conclusion and Future Work; 7.1 Conclusion; 7.2 Future Work; References; Evolving Ensembles: What Can We Learn from Biological Mutualisms?; 1 Introduction; 2 Evolving Ensembles; 3 Biological Mutualism; 4 Mutualistic Evolutionary Algorithms; 5 Evolving Mutualistic Ensembles; 5.1 Promoting Mutuality; 5.2 Identifying Partners; 6 Conclusions; References; An Artificial Immune System for Self-Healing in Swarm Robotic Systems; 1 Introduction

• 2 Robotic Swarm Taxis2.1 Anchoring of the Swarm; 3 Initial Investigations into the -algorithm; 3.1 Experimental Protocol; 4 Immune Inspiration: Granuloma Formation; 4.1 Granuloma Formation Algorithm; 5 Experimental Investigation: Granuloma Formation Algorithm; 5.1 Results; 5.2 Maintaining Energy Across the Swarm; 6 Conclusion; References; Team Search Tactics Through Multi-Agent HyperNEAT; 1 Introduction; 2 Background; 2.1 NeuroEvolution of Augmenting Topologies (NEAT); 2.2 CPPNs and HyperNEAT; 2.3 Multi-Agent HyperNEAT; 3 Experimental Method; 3.1 Search Task; 3.2 Agent Simulator

This book constitutes the proceedings of the 10th International Conference on Information Processing in Cells and Tissues, IPCAT 2015, held in San Diego, CA, USA, in September 2015. The 19 papers presented in this volume were carefully reviewed and selected from 22 submissions. They were organized in topical sections named: biochemical information processing; collective and distributed behavior; patterning and rhythm generation; biochemical regulatory networks; metabolomics and phenotypes; and neural modelling and neural networks.